Improvement of structural RNA alignments by structure comparison
2008-2009, Faculty of Technology, Bielefeld University

Before:

	Please customise Pipeline.xml: enter the correct paths of your RNA tools.

Quick HowTo:

	perl Pipeline.pl <FASTA-File> [-p=(0..9)] [-r=(0..2)] [-sci]

Options:

-p=(0..9)
	Level of printed information (from 0 = none till 9 = all)

-q=(0..2)
	Safety level
		0: No Assertions
		1: Assertions to verify input data of each module
		2: Assertions to verify input and output data of each module

-sci
	Print the SCI score.

