debug /homes/itwill/gsa2/cpp/testDMatrix
file testDMatrix.cpp
stop at 15
run
next
graph display weights
step
file testDMatrix.cpp
stop at 15
run
next
step
finish
next
quit
info line 'append_ali'
break append_ali
run
set args -c dayhoff -p 2 default.seq
run
graph display a2
graph display a1
up
break dcalign
run
graph display ali
next
until dca.c:165
next
until dca.c:165
next
until dca.c:168
next
print tmp_a
step
next
print a
print *a
step
next
kill
quit
set args -G8 -c/tmp/gsa_c.27982 /tmp/gsa_i.27982
run
info stack
quit
set args -c dayhoff -p 2 default.seq
run
quit
set args-c dayhoff -p 2 default.seq
set args -c dayhoff -p 2 default.seq
run
print m_alignment
print *(m_alignment)
break AlignmentManager.cpp:155
run
step
next
step
print m_alignmentGenerator
step
next
print par
next
kill
quit
set args  -c unitG1.cost -p 2 ab3.seq
info line 'Column::isGap'
break Column.hpp:62
run
info line 'Score::gapcost'
info line 'Scores::gapcost'
break Scores.cpp:87
run
print gamma()
next
print col_old
next
print maxy
next
graph display maxy
graph display sum
graph display id1
graph display id2
next
graph display id2
next
kill
quit

