file /KM/guests/thwille/gsa2/cpp/testB
file /KM/guests/thwille/gsa2/cpp/testE
file /KM/guests/thwille/gsa2/cpp/testF
file /KM/guests/thwille/gsa2/cpp/testD
file /KM/guests/thwille/gsa2/cpp/testMsa
file /KM/guests/thwille/gsa2/msa.21/msa_21
file /KM/guests/thwille/gsa2/cpp/oma
tbreak TrieGraycodeColumnFaces.cpp:120
cont
print o
next
step
next
step
break TrieGraycodeColumnFaces.cpp:112
run
cont
print o
next
print o
graph display o
next
graph display haveToCheck
next
step
graph display resul
step
next
step
finish
step
finish
step
finish
step
finish
step
set args -c xtest/unitG1.cost -l 5 xtest/cccc.seq
run
graph refresh
graph undisplay 10 11 12 13 14
delete 2
cont
graph display o at (32, 48)
graph display haveToCheck at (64, 96)
delete 4
graph undisplay 15
list 'Face::Face()'
list 'Face::Face'
break Face.cpp:98
run
break Face.cpp:58
cont
graph display i
graph display j
next
graph display sdHHj
next
graph display sdHHj
next
run
graph refresh
delete 5
cont
next
graph display j
next
graph undisplay 18 19
delete 6
run
graph refresh
kill
set args  -c xtest/dayhoff.cost -l 5 xtest/prot5.seq
run
up
break AlignDijkstraSegment.cpp:209
run
step
finish
step
finish
step
next
step
finish
step
next
step
next
tbreak TrieGraycodeColumnFaces.cpp:120
cont
step
break Trie_GSA.cpp:49
step
graph display resul at (48, 48)
next
break TrieGraycodeColumnFaces.cpp:183
step
finish
step
finish
list 'Face::Face'
break Face.cpp:58
run
graph refresh
graph display j at (80, 48)
delete 11
graph undisplay 21
run
up
run
next
graph display resul at (48, 48)
graph undisplay 22
delete 10
run
delete 9
cont
step
finish
step
finish
step
next
tbreak Trie.cpp:204
cont
step
finish
step
tbreak TrieGraycodeColumnFaces.cpp:121
cont
step
break TrieGraycodeColumnFaces.cpp:139
disable 14
next
print coo[x]
print coo[y]
step
finish
step
finish
step
finish
step
next
step
finish
step
finish
step
finish
step
break Section.cpp:80
cont
finish
cont
graph display i
graph display low
graph display high
cont
up
break TrieGraycodeColumnFaces.cpp:187
cont
step
up
down
step
up
next
finish
next
step
finish
step
finish
step
next
step
next
step
next
step
next
graph display vRBound
graph display *(this->vRBound) dependent on 26
graph display *(this->vRBound->parent) dependent on 27
next
step
next
delete 1
next
tbreak AlignDijkstraSegment.cpp:312
cont
delete 17
delete 15
finish
delete 16
finish
next
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
tbreak AlignDijkstraSegment.cpp:354
cont
delete 28
y
set args -c xtest/dayhoff.cost -l 2 xtest/a3a.seq
run
up
down
break AlignDijkstraSegment.cpp:209
run
step
finish
step
finish
step
break Trie_GSA.cpp:77
finish
delete 1
cont
step
next
tbreak Trie.cpp:204
cont
step
finish
step
next
tbreak TrieGraycodeColumnFaces.cpp:120
cont
step
next
graph display x
graph display y
print coo[x]
print coo[y]
next
step
next
step
finish
step
up
quit

