de.unibi.techfak.jpredictor.operator
Class ScoreBand

java.lang.Object
  de.unibi.techfak.jpredictor.operator.ScoreBand

public class ScoreBand
extends java.lang.Object

Stores one band of scores. Is also used to process scores.

Field Summary

private int	count Number of scores comprised in this band.
private int	end The end of the band, e.g.
private int	id The id of the band, e.g.
private double	maxScore The maximum of all scores comprised in this band.
private double	minScore The minimum of all scores comprised in this band.
private int	start The start of the band, e.g.
private double	sumScore The sum over all scores comprised in this band.

Constructor Summary

ScoreBand(ScoredSequenceStruct sss)
Inits this band with a score on a sequence.

Method Summary

boolean	addBand(ScoreBand sb) Adds a whole band to this one.
boolean	addScore(ScoredSequenceStruct sss) Adds a score to this band.
int	getCount() Gives the number of scores previously added to the band.
int	getEnd() Gives the end position of the band.
int	getId() Gives the id of the band.
double	getMaxScore() Gives the maximum of all scores previously added to the band.
double	getMeanScore() Gives the mean of all scores previously added to the band.
double	getMinScore() Gives the minimum of all scores previously added to the band.
int	getStart() Gives the start position of the band.
double	getSumScore() Gives the sum scores over all scores previously added to the band.
java.lang.String	toString() Prints a string containing all informations stored in this band.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

id

private int id

The id of the band, e.g. the number of the sequence actually processed.

start

private int start

The start of the band, e.g. on the sequence.

end

private int end

The end of the band, e.g. on the sequence.

minScore

private double minScore

The minimum of all scores comprised in this band.

maxScore

private double maxScore

The maximum of all scores comprised in this band.

count

private int count

Number of scores comprised in this band.

sumScore

private double sumScore

The sum over all scores comprised in this band.

Constructor Detail

ScoreBand

public ScoreBand(ScoredSequenceStruct sss)
          throws java.lang.NullPointerException

Inits this band with a score on a sequence. The sequence number is stored in the id.

Parameters:

sss - The score within a sequence window to init this band.

Throws:

java.lang.NullPointerException - If the parameter is null.

Method Detail

addScore

public boolean addScore(ScoredSequenceStruct sss)

Adds a score to this band. The score is only added if the id in this band equals the seqNumber of the given struct.

Parameters:

sss - The score within a sequence window to add to this band.

Returns:

true, iff the score was added, false otherwise.

addBand

public boolean addBand(ScoreBand sb)

Adds a whole band to this one. If both id's do not match, nothing is added.

Parameters:

sb - The band that is to be added to this one.

Returns:

true, iff the band was added, false otherwise.

getCount

public int getCount()

Gives the number of scores previously added to the band.

Returns:

The number of scores added to the band.

getEnd

public int getEnd()

Gives the end position of the band. The end position is the maximum of all positions that came with the added scores.

Returns:

The end position of the band.

getId

public int getId()

Gives the id of the band. The id was set with the score this band was constructed with. Only scores with the same id (that is the seqNumber) are added to the band.

Returns:

The identifikation number of the band.

getMaxScore

public double getMaxScore()

Gives the maximum of all scores previously added to the band.

Returns:

The maximum of all scores added to this band.

getMinScore

public double getMinScore()

Gives the minimum of all scores previously added to the band.

Returns:

The minimum of all scores added to this band.

getStart

public int getStart()

Gives the start position of the band. The starting position is the minimum of all positions that came with the added scores.

Returns:

The start position of the band.

getSumScore

public double getSumScore()

Gives the sum scores over all scores previously added to the band.

Returns:

The sum score over all scores added to the band.

getMeanScore

public double getMeanScore()

Gives the mean of all scores previously added to the band.

Returns:

The mean value of all scores added to this band.

toString

public java.lang.String toString()

Prints a string containing all informations stored in this band. The form is 'id:start-end:max;min;mean'.

Overrides:

toString in class java.lang.Object