de.unibi.techfak.InSilicoDicer.GUI
Class ISD

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  de.unibi.techfak.InSilicoDicer.GUI.ISD

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

public class ISD
extends javax.swing.JPanel

The class ISD builds a main Panel for the complete GUI WITHOUT JMenubar. Class ISD is used a basic for the Application ISD.main and the Applet (ISDApplet). Remove all design style (color coding) for Swing elements, this should be done by adding a new L&F skin.

Author:

Sylvia Stippmann , Jan Krueger

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected javax.swing.JButton	allSimilarConfirmButton Actions on top left
protected javax.swing.JComboBox	chooseDB
protected javax.swing.JButton	clear Tree and around
protected javax.swing.JComboBox	consChooser
protected javax.swing.JSpinner	cutoffSpinner
protected java.util.Vector<java.lang.String>	dbVector
static java.lang.String	example final example sequence for ISD
protected javax.swing.JButton	exampleButton Actions on top left
protected javax.swing.JButton	extrinsicProfile Profiles
protected javax.swing.JComboBox	foldChooser
protected javax.swing.JLabel	info
protected javax.swing.JTextArea	inputArea
protected javax.swing.JButton	inputConfirmButton Actions on top left
protected javax.swing.JButton	intrinsicPlot Profiles
protected javax.swing.JButton	intrinsicProfile Profiles
protected java.util.List<javax.swing.JComponent>	jcomponents List of all JComponents which should be deactivated, if any component is calculating
protected javax.swing.JButton	loadPCs Actions on top left
protected javax.swing.JComboBox	maChooser
protected javax.swing.JComponent	newContentPane
protected javax.swing.JFrame	parent Reference of parentFrame
protected javax.swing.JSplitPane	playground
protected javax.swing.JInternalFrame	plotFrame
protected javax.swing.JPanel	plotPane
protected javax.swing.JTabbedPane	plots
protected javax.swing.tree.DefaultMutableTreeNode	root
protected javax.swing.JComboBox	scoreChooser
protected javax.swing.JScrollPane	scroller
protected javax.swing.JScrollPane	scrollTree
protected javax.swing.JButton	searchButton Actions on top left
protected javax.swing.JButton	selectAll Tree and around
protected javax.swing.JButton	selectedSimilarConfirmButton Actions on top left
static long	serialVersionUID
protected javax.swing.JList	similarList
protected SimilarListModel	similarListModel
protected javax.swing.JFrame	splashframe
protected javax.swing.JSplitPane	split
protected javax.swing.JTree	tree
protected javax.swing.tree.DefaultTreeModel	treeModel

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

ISD()
Creates the MainPanel

ISD(javax.swing.JFrame parent)
Creates the MainPanel

ISD(javax.swing.JFrame parent, java.lang.String arg)
Creates the MainPanel with Parent frame references

ISD(java.lang.String arg)
Creates the MainPanel;

Method Summary

void	checkJComponentEnabled() Check, wether a action component could be activated
protected static void	createAndShowGUI() private static helper function which 'creates and showes GUI'
PrecursorContainer	getAllSim()
PrecursorContainer	getSelectedPCs() Get the selected Precursors from JTree and put them into a PrecursorContainer
javax.swing.JTree	getTree()
static void	main(java.lang.String[] args)
void	setAllSim(PrecursorContainer allSim)
void	setJComponentEnabled(boolean enabled) Enables or Disables all jcomponent components
void	setTree(javax.swing.JTree tree)
void	showErrorDialog(java.lang.String text)
void	showInfoDialog(java.lang.String text)
void	showWarnDialog(java.lang.String text)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

example

public static final java.lang.String example

final example sequence for ISD

See Also:

Constant Field Values

jcomponents

protected java.util.List<javax.swing.JComponent> jcomponents

List of all JComponents which should be deactivated, if any component is calculating

splashframe

protected javax.swing.JFrame splashframe

loadPCs

protected javax.swing.JButton loadPCs

Actions on top left

exampleButton

protected javax.swing.JButton exampleButton

Actions on top left

inputConfirmButton

protected javax.swing.JButton inputConfirmButton

Actions on top left

searchButton

protected javax.swing.JButton searchButton

Actions on top left

allSimilarConfirmButton

protected javax.swing.JButton allSimilarConfirmButton

Actions on top left

selectedSimilarConfirmButton

protected javax.swing.JButton selectedSimilarConfirmButton

Actions on top left

inputArea

protected javax.swing.JTextArea inputArea

similarList

protected javax.swing.JList similarList

similarListModel

protected SimilarListModel similarListModel

extrinsicProfile

protected javax.swing.JButton extrinsicProfile

Profiles

intrinsicProfile

protected javax.swing.JButton intrinsicProfile

Profiles

intrinsicPlot

protected javax.swing.JButton intrinsicPlot

Profiles

selectAll

protected javax.swing.JButton selectAll

Tree and around

clear

protected javax.swing.JButton clear

Tree and around

tree

protected javax.swing.JTree tree

parent

protected javax.swing.JFrame parent

Reference of parentFrame

plots

protected javax.swing.JTabbedPane plots

plotFrame

protected javax.swing.JInternalFrame plotFrame

newContentPane

protected javax.swing.JComponent newContentPane

scroller

protected javax.swing.JScrollPane scroller

plotPane

protected javax.swing.JPanel plotPane

playground

protected javax.swing.JSplitPane playground

split

protected javax.swing.JSplitPane split

cutoffSpinner

protected javax.swing.JSpinner cutoffSpinner

dbVector

protected java.util.Vector<java.lang.String> dbVector

chooseDB

protected javax.swing.JComboBox chooseDB

info

protected javax.swing.JLabel info

treeModel

protected javax.swing.tree.DefaultTreeModel treeModel

root

protected javax.swing.tree.DefaultMutableTreeNode root

scrollTree

protected javax.swing.JScrollPane scrollTree

maChooser

protected javax.swing.JComboBox maChooser

consChooser

protected javax.swing.JComboBox consChooser

foldChooser

protected javax.swing.JComboBox foldChooser

scoreChooser

protected javax.swing.JComboBox scoreChooser

Constructor Detail

ISD

public ISD()

Creates the MainPanel

ISD

public ISD(java.lang.String arg)

Creates the MainPanel;

Parameters:

arg - - argument contains a URL to alternative configuration

ISD

public ISD(javax.swing.JFrame parent)

Creates the MainPanel

Parameters:

parent - - ParentFrame of this panel

ISD

public ISD(javax.swing.JFrame parent,
           java.lang.String arg)

Creates the MainPanel with Parent frame references

Parameters:

parent - - ParentFrame this Panel

arg - - argument contains a URL to a alternative configuration

Method Detail

getTree

public javax.swing.JTree getTree()

Returns:

Returns the tree.

setTree

public void setTree(javax.swing.JTree tree)

Parameters:

tree - The tree to set.

getAllSim

public PrecursorContainer getAllSim()

Returns:

Returns the allSim.

setAllSim

public void setAllSim(PrecursorContainer allSim)

Parameters:

allSim - The allSim to set.

getSelectedPCs

public PrecursorContainer getSelectedPCs()

Get the selected Precursors from JTree and put them into a PrecursorContainer

Returns:

Selected Precursors

checkJComponentEnabled

public void checkJComponentEnabled()

Check, wether a action component could be activated

setJComponentEnabled

public void setJComponentEnabled(boolean enabled)

Enables or Disables all jcomponent components

Parameters:

enabled - - boolean

showInfoDialog

public void showInfoDialog(java.lang.String text)

showWarnDialog

public void showWarnDialog(java.lang.String text)

showErrorDialog

public void showErrorDialog(java.lang.String text)

createAndShowGUI

protected static void createAndShowGUI()

private static helper function which 'creates and showes GUI'

main

public static void main(java.lang.String[] args)