de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor
Class RNAfoldWS

java.lang.Object
  de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor.RNAfoldWS

All Implemented Interfaces:

Action, IFoldingAction

public class RNAfoldWS
extends java.lang.Object
implements IFoldingAction

Implementation of interface IFoldingAction, which uses RNAfold as webservice running on BiBiServ

Author:

Jan Krüger

Constructor Summary

RNAfoldWS()
Default Constructor - creates a new Status object and call constructor RNAFoldWS(Status status)

RNAfoldWS(Status status)
Constructor

Method Summary

void	foldPrecursor(PrecursorContainer pc) Creates a File with the Precursors Nucleotide Sequence; Folds the given precursor with vienna package; Adds the Folding to Precursor`s properties
Status	getStatus() Returns the status of current Action
void	setStatus(Status status) Set the status of current Action

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RNAfoldWS

public RNAfoldWS()

Default Constructor - creates a new Status object and call constructor RNAFoldWS(Status status)

RNAfoldWS

public RNAfoldWS(Status status)

Constructor

Parameters:

status - - The status of this class

Method Detail

foldPrecursor

public void foldPrecursor(PrecursorContainer pc)

Description copied from interface: IFoldingAction

Creates a File with the Precursors Nucleotide Sequence; Folds the given precursor with vienna package; Adds the Folding to Precursor`s properties

Specified by:

foldPrecursor in interface IFoldingAction

getStatus

public Status getStatus()

Description copied from interface: Action

Returns the status of current Action

Specified by:

getStatus in interface Action

Returns:

Status of this Action

setStatus

public void setStatus(Status status)

Description copied from interface: Action

Set the status of current Action

Specified by:

setStatus in interface Action

Parameters:

status - - Status to be set