de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor
Class Fold_Vienna

java.lang.Object
  de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor.Fold_Vienna

All Implemented Interfaces:

Action, IFoldingAction

public class Fold_Vienna
extends java.lang.Object
implements IFoldingAction

Implementation of interface IFoldingAction, used RNAfold (locally) from Vienna package to support folding.

Author:

Sylvia Tippmann Jan Krüger

Constructor Summary

Fold_Vienna()
Constructor

Fold_Vienna(Status status)
Constructor

Method Summary

void	foldPrecursor(PrecursorContainer pc) Creates a File with the Precursors Nucleotide Sequence; Folds the given precursor with vienna package; Adds the Folding to Precursor`s properties
Status	getStatus() Returns the status of current Action
void	setStatus(Status status) Set the status of current Action

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Fold_Vienna

public Fold_Vienna()

Constructor

Fold_Vienna

public Fold_Vienna(Status status)

Constructor

Parameters:

status -

Method Detail

foldPrecursor

public void foldPrecursor(PrecursorContainer pc)

Description copied from interface: IFoldingAction

Creates a File with the Precursors Nucleotide Sequence; Folds the given precursor with vienna package; Adds the Folding to Precursor`s properties

Specified by:

foldPrecursor in interface IFoldingAction

getStatus

public Status getStatus()

Description copied from interface: Action

Returns the status of current Action

Specified by:

getStatus in interface Action

Returns:

Status of this Action

setStatus

public void setStatus(Status status)

Description copied from interface: Action

Set the status of current Action

Specified by:

setStatus in interface Action

Parameters:

status - - Status to be set