de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors
Class MA_ClustalW

java.lang.Object
  de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors.MA_ClustalW

All Implemented Interfaces:

Action, IMultipleAlignAction

public class MA_ClustalW
extends java.lang.Object
implements IMultipleAlignAction

Implementation of interface IMultipleAlignAction implements an alignments class using a locally installed clustalw tool.

Author:

Sylvia Tippmann Jan Krüger

Constructor Summary

MA_ClustalW()
Default Constructor - creates a new Status object and calls constructor MA_ClustalW(Status status)

MA_ClustalW(Status status)
Constructor

Method Summary

java.util.Vector	align(PrecursorContainer pc) Creates Multiple Alignment
Status	getStatus() Returns the status of current Action
void	setStatus(Status status) Set the status of current Action

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MA_ClustalW

public MA_ClustalW()

Default Constructor - creates a new Status object and calls constructor MA_ClustalW(Status status)

MA_ClustalW

public MA_ClustalW(Status status)

Constructor

Parameters:

status - - The status to be set

Method Detail

align

public java.util.Vector align(PrecursorContainer pc)

Description copied from interface: IMultipleAlignAction

Creates Multiple Alignment

Specified by:

align in interface IMultipleAlignAction

Parameters:

pc - - PreCursor container containing at least 2 sequences

Returns:

Vector - Vector containing aligned sequences in order of input Precursor container

getStatus

public Status getStatus()

Description copied from interface: Action

Returns the status of current Action

Specified by:

getStatus in interface Action

Returns:

Status of this Action

setStatus

public void setStatus(Status status)

Description copied from interface: Action

Set the status of current Action

Specified by:

setStatus in interface Action

Parameters:

status - - Status to be set