de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors
Class ClustalWWS

java.lang.Object
  de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors.ClustalWWS

All Implemented Interfaces:

Action, IMultipleAlignAction

public class ClustalWWS
extends java.lang.Object
implements IMultipleAlignAction

Implementation of interface IFoldingAction, which uses RNAfold as webservice running on BiBiServ

Author:

Jan Krüger

Constructor Summary

ClustalWWS()
Default Constructor - creates a new Status object and call constructor RNAFoldWS(Status status)

ClustalWWS(Status status)
Constructor

Method Summary

java.util.Vector<java.lang.String>	align(PrecursorContainer pc) Creates Multiple Alignment
Status	getStatus() Returns the status of current Action
void	setStatus(Status status) Set the status of current Action

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ClustalWWS

public ClustalWWS()

Default Constructor - creates a new Status object and call constructor RNAFoldWS(Status status)

ClustalWWS

public ClustalWWS(Status status)

Constructor

Parameters:

status - - The status of this class

Method Detail

align

public java.util.Vector<java.lang.String> align(PrecursorContainer pc)

Description copied from interface: IMultipleAlignAction

Creates Multiple Alignment

Specified by:

align in interface IMultipleAlignAction

Parameters:

pc - - PreCursor container containing at least 2 sequences

Returns:

Vector - Vector containing aligned sequences in order of input Precursor container

getStatus

public Status getStatus()

Description copied from interface: Action

Returns the status of current Action

Specified by:

getStatus in interface Action

Returns:

Status of this Action

setStatus

public void setStatus(Status status)

Description copied from interface: Action

Set the status of current Action

Specified by:

setStatus in interface Action

Parameters:

status - - Status to be set