InSilicoDicer 1.1                            2006/02/14
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Directory structure of InSilicoDicer project

classes  - contains the compiled distribution as classfiles

doc - contains the Java doc documentation

etc - contains all configuration files
etc/log4j.properties
etc/conf.properties
etc/Fold_Vienna.conf
etc/MA_ClustalW.conf

lib - contains all necessary libs
lib/activation.jar  
lib/axis_1.3.jar  
lib/commons-discovery.jar  
lib/commons-logging.jar  
lib/jaxrpc.jar  
lib/log4j-1.2.8.jar  
lib/mail.jar  
lib/saaj.jar  
lib/wsdl4j.jar

share/databases - contains databases and miRNAregistry
share/databases/cElegans.vienna.gz
share/databases/mMusculus.vienna.gz
share/databases/miRNA.dat.gz
share/databases/miRNAregistry.vienna.gz
 
share/images - contain splash image
share/images/insilicodicer_splash.gif

src - contains the complete source path


The central ant build file contains four targets.


clean -  remove all temporay stuff and clean dist dir

compile - compile the complete src tree using the lib dir to the
          dist dir.

dist - generate complete distribution for download

doc - generate the Java docs

webstart - generate (signed) jar file for Java webstart




