Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD

## de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchBySequence
Interface ILocalAlign

All Known Implementing Classes:
  SWalign

    public interface ILocalAlign

Author:
  Sylvia

Method Summary
`int` | `align(int inDELscore, int rpSCORE, int matchSCORE, java.lang.String searchSeq, java.lang.String dbSeq)` Executes a Local Alignment Action where searchSeq is the Nuleotide Sequence to align with all possible Precursor Sequences (dbSeq) in the miRNAdatabase

Method Detail

### align

    int align(int inDELscore,
              int rpSCORE,
              int matchSCORE,
              java.lang.String searchSeq,
              java.lang.String dbSeq)

  Executes a Local Alignment Action where searchSeq is the Nuleotide Sequence to align with all possible Precursor Sequences (dbSeq) in the miRNAdatabase

  Parameters:
    `inDELscore` -
    `rpSCORE` -
    `matchSCORE` -
    `searchSeq` -
    `dbSeq` -
  Returns:
    The similarity of two precursor sequences.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD