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## Hierarchy For All Packages

Package Hierarchies:
  de.unibi.techfak.InSilicoDicer.Actions, de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors, de.unibi.techfak.InSilicoDicer.Actions.CalcConservation, de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor, de.unibi.techfak.InSilicoDicer.Actions.ScorePrecursor, de.unibi.techfak.InSilicoDicer.GUI, de.unibi.techfak.InSilicoDicer.OperatingPackage, de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchByName, de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchBySequence

## Class Hierarchy

- java.lang.Object
  - java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    - java.util.AbstractList<E> (implements java.util.List<E>)
      - java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        - de.unibi.techfak.InSilicoDicer.OperatingPackage.PrecursorContainer (implements java.io.Serializable)
  - de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchByName.BMi (implements de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchByName.IPatternMatching)
  - de.unibi.techfak.InSilicoDicer.Actions.CalcConservation.CalcCons_Entropy (implements de.unibi.techfak.InSilicoDicer.Actions.CalcConservation.ICalcConservationAction)
  - de.unibi.techfak.InSilicoDicer.Actions.CalcConservation.CalcCons_Entropy_seed (implements de.unibi.techfak.InSilicoDicer.Actions.CalcConservation.ICalcConservationAction)
  - de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors.ClustalWWS (implements de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors.IMultipleAlignAction)
  - java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    - java.awt.Container
      - javax.swing.JComponent (implements java.io.Serializable)
        - javax.swing.JPanel (implements javax.accessibility.Accessible)
          - de.unibi.techfak.InSilicoDicer.GUI.ISD
          - de.unibi.techfak.InSilicoDicer.GUI.Plot
      - java.awt.Panel (implements javax.accessibility.Accessible)
        - java.applet.Applet
          - javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            - de.unibi.techfak.InSilicoDicer.OperatingPackage.Start_ISD
      - java.awt.Window (implements javax.accessibility.Accessible)
        - java.awt.Frame (implements java.awt.MenuContainer)
          - javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            - de.unibi.techfak.InSilicoDicer.GUI.InfoFrame
            - de.unibi.techfak.InSilicoDicer.GUI.OptionFrame
            - de.unibi.techfak.InSilicoDicer.GUI.SplashFrame
            - de.unibi.techfak.InSilicoDicer.GUI.StatusFrame (implements java.lang.Runnable)
  - de.unibi.techfak.InSilicoDicer.OperatingPackage.Evaluation
  - de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor.Fold_Vienna (implements de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor.IFoldingAction)
  - de.unibi.techfak.InSilicoDicer.GUI.ISDHandler (implements java.awt.event.ActionListener)
  - de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors.MA_ClustalW (implements de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors.IMultipleAlignAction)
  - de.unibi.techfak.InSilicoDicer.GUI.MenuHandler (implements java.awt.event.ActionListener)
  - de.unibi.techfak.InSilicoDicer.OperatingPackage.Operator (implements java.io.Serializable)
  - de.unibi.techfak.InSilicoDicer.GUI.OptionHandler (implements java.awt.event.ActionListener)
  - de.unibi.techfak.InSilicoDicer.OperatingPackage.Precursor (implements java.io.Serializable)
  - de.unibi.techfak.InSilicoDicer.OperatingPackage.PrettyPrinter
  - de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor.RNAfoldWS (implements de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor.IFoldingAction)
  - de.unibi.techfak.InSilicoDicer.Actions.ScorePrecursor.Score_Gaasterland (implements de.unibi.techfak.InSilicoDicer.Actions.ScorePrecursor.IScoreAction)
  - de.unibi.techfak.InSilicoDicer.Actions.ScoreAlign
  - de.unibi.techfak.InSilicoDicer.GUI.SimilarListModel (implements javax.swing.ListModel)
  - de.unibi.techfak.InSilicoDicer.Actions.Smoother
  - de.unibi.techfak.InSilicoDicer.Actions.Status (implements java.lang.Cloneable)
  - de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchBySequence.SWalign (implements de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchBySequence.ILocalAlign, java.io.Serializable)

## Interface Hierarchy

- de.unibi.techfak.InSilicoDicer.Actions.Action
  - de.unibi.techfak.InSilicoDicer.Actions.CalcConservation.ICalcConservationAction
  - de.unibi.techfak.InSilicoDicer.Actions.FoldPrecursor.IFoldingAction
  - de.unibi.techfak.InSilicoDicer.Actions.AlignPrecursors.IMultipleAlignAction
  - de.unibi.techfak.InSilicoDicer.Actions.ScorePrecursor.IScoreAction
- de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchBySequence.ILocalAlign
- de.unibi.techfak.InSilicoDicer.OperatingPackage.SearchMethods.SearchByName.IPatternMatching

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